This Dot Plot can be used to find regions of complementary
sequence (hence potential stable intermolecular base pairing) in two
different single stranded RNA or DNA molcecules (self-complementarity
and consequently intramolecular base pairing should be investigated
using the 'Tinoco' dot plot tool here).
The output formats are PDF, PostScript, CSV, and GIF. PDF can be displayed by Adobe's Acrobat Reader, PostScript has also to be displayed by an external viewer (Ghostscript), CSV is viewable in a spreadsheet program, and GIF is automatically embedded in a HTML document as 'inline image'. GIF output is currently limited to sequences shorter than 200 Nts in length.
If you have any suggestions or comments on this service, just send us
G. Steger Last modified: Wed Jun 13 10:34:30 CEST 2001