Institut für Physikalische Biologie

Web services

StrAl Multiple alignments of non-coding RNAs.

Poland Prediction of melting transitions of dsRNA, DNA or RNA/DNA hybrids.

Tinoco Plot Display possible secondary structure elements in single stranded RNA or DNA.

Dot Plot Display possible intermolecular secondary structure elements between two single stranded RNA or DNA molecules..

Langmuir Plot Evaluate binding curves (adsorption isotherms) according to Hill or Langmuir.

Static pages

novoMIR (original software; 2010) Tool for de novo prediction of microRNA-coding regions in a single plant genome as described by Teune & Steger (2010) J. Nucleic Acids 2010. novoMIR update (2011) Short description of novoMIR's output

BRAliBase Benchmark RNA alignment database for sequence alignment programs.

ConStruct v3 RNA alignment editor and consensus structure prediction tool.

Supplement to Diermann et al. (2010) Characterization of plant miRNAs and small RNAs derived from potato spindle tuber viroid (PSTVd) in infected tomato. Biol. Chem. 391, 1379-1390.

International Conference on Viroids and Viroid-Like RNAs (2008)

Supplement to Matousek et al. (2007) Experimental transmission of pospiviroid populations to weed species characteristic of potato and hop fields. J. Virol. 8, 11891-11899.

G. Steger Last modified: Sep 28 2012